Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
BLCA rs149367120 chr13:25832831 CTAAAAT/C 4.1E-8 404 17.87 17.53 5.13 KM Plot
BLCA rs150656 chr2:33179432 C/T 2.6E-5 405 16.2 20.5 16 KM Plot
BLCA rs150657 chr2:33179579 G/T 5.95E-6 395 16.02 21.08 16.17 KM Plot
BLCA rs1588263 chr5:131577158 T/C 1.56E-5 402 21.37 17.17 14.47 KM Plot
BLCA rs162894 chr5:131611872 T/G 5.41E-6 392 18.62 19.45 14.22 KM Plot
BLCA rs162904 chr5:131595784 C/T 4.36E-6 405 14.1 20.23 17.92 KM Plot
BLCA rs162908 chr5:131578955 T/A 2.04E-5 399 21.32 17.4 14.37 KM Plot
BLCA rs16881465 chr8:33958354 C/T 1.07E-7 405 18.13 12.4 4.47 KM Plot
BLCA rs16893316 chr4:16307516 G/T 3.49E-6 405 17.23 19.22 10.93 KM Plot
BLCA rs16911770 chr9:27756625 A/G 6.22E-15 405 2.07 14.27 18.13 KM Plot
BLCA rs171427 chr14:56745853 A/G 8.11E-9 405 17.4 21.27 2.53 KM Plot
BLCA rs17594978 chr4:119336398 T/C 1.03E-12 399 17.4 20.33 1.38 KM Plot
BLCA rs17636193 chr5:3540161 A/G 7.93E-6 405 4.37 20.58 17.03 KM Plot
BLCA rs1793008 chr11:20737287 C/G 6.71E-8 405 5.13 19.53 16.7 KM Plot
BLCA rs182595388 chr4:119330114 T/A 1.13E-12 400 17.4 20.15 1.38 KM Plot